These healthy low carb apple muffins are grain-free, gluten free and loaded with goodness. A much better breakfast option than a traditional muffin with blood sugar stabilizing healthy fats and fewer carbs.

I love baked goods, but I am undeniably not a baker.
Trying to follow a recipe is futile. The dietitian half of my brain inevitably takes over. I can never add the full 2 cups of sugar or the damn white flour. After all the substitutions the finished recipe is something entirely different.
Measuring ingredients is something I am not good at. I try to eyeball things while baking as I would with regular cooking. It serves me well when I cook and I have a rain man-like gift for eyeballing, but baking is a science, they say.
Exact measurements are needed, they say. Who has the time and patience for that? I guess most people.
That is why I mostly stick to paleo baking. If you start with wholesome ingredients it is much easier to just follow a recipe as written, even if it requires measuring.
These low carb apple muffins are the best of both worlds. They are healthy, made from whole foods, and are grain-free and dairy-free. And, soft and incredibly delicious to boot.
I will always have a place in my heart (and belly) for real sweet treats that have no substitutions. The type of treats you use the full 2 cups of sugar. That place just isn't at breakfast for me.

What Makes These Muffins A Healthier Option Breakfast?
1. Appropriate carb to fat ratio.
These puppies are lower in carbohydrates than conventional muffins. They also have a healthy amount of fat from the eggs, coconut oil and coconut flour.
This allows for more stable blood glucose control. Now, carbs are not the enemy. Carbohydrates certainly have a place in our diets. The problem comes down to both carbohydrate volume and timing.
High carb meals, specifically those made with processed grains and sugars, first thing in the morning can cause spikes in blood sugar. This triggers undesirable spikes in insulin right off the bat which sets you up for blood sugar swings, hormonal dysregulation and unstable energy levels throughout the day. Boo.
2. No processed sugar.
Enough said.
3. Gut friendly ingredients.
All the ingredients used in this recipe are gut-friendly, and are unlikely to cause reaction or intolerance for most people (with the exception of the eggs and almonds). By removing any inflammatory ingredients and most common allergens, you can minimize risk GI symptoms, bloating or gut inflammation.
The coconut and almond flour are also great prebiotics to help feed your beneficial gut flora.
Recipe Tips
- Silicone muffin liners or a well oiled muffin tin would work better than paper liners for these muffins. I use these muffin liners. They are reusable, so that's a major plus.
- Check the muffins using a tooth pick or knife. Poke a muffin 15 minutes and if the toothpick comes out clean the muffins are done. If it doesn't, cook for another five minutes.
Substitutions
- Stevia - Substitute any preferred sweetener to taste. Quantities will vary based on the sweetener you use. If you're looking to keep carb count low, opt for monk fruit or erythritol.
- Pink Lady Apple - Any apple appropriate for baking would be okay. Steer clear from red delicious and green apples. I would look for a honey crisp or opal apple.
- Almond Milk - Substitute any milk or milk alternative. Using dairy will make this recipe no longer paleo.
- Coconut Sugar - This is add a little sweetness and a nice warm color. Using maple sugar would be the best swap, but erythritol (a golden version would be best) or brown sugar if not paleo would work as well.
- Coconut Oil - Using butter would be fine!
Other Healthy Breakfast Baked Goods
- Gluten Free Cornmeal Pancakes
- No Sugar Added Banana Muffins
- Gluten Free Banana Flour Pancakes
- Keto Pumpkin Bread
📖 Recipe

Low Carb Apple Muffins
Ingredients
- 1 ¼ cup blanched almond flour
- 3 tablespoon coconut flour
- ½ teaspoon baking powder `
- ¼ teaspoon salt
- 1 tablespoon cinnamon
- ½ teaspoon pumpkin pie spice
- ½ teaspoon ground ginger
- ¼ teaspoon pure stevia powder
- 2 large eggs
- ¼ cup coconut oil melted
- 3 tablespoon almond milk
- 1 teaspoon pure vanilla extract
- 1 pink lady apple
- 1 tablespoon coconut sugar optional
Instructions
- Preheat the oven to 375 degree Fahrenheit.
- Grease a muffin tin with coconut oil.
- Core the apple and dice into very small pieces.
- Combine all dry ingredients together in a large mixing bowl. Mix together. Add melted coconut oil, and mix. Then add eggs and other wet ingredients. Whisk together.
- Fold in apples. Mix so that they are evenly distributed.
- The finished mixture will be thicker than muffin batter made with flour. Spoon into muffin pan filling the cups completely full. These muffins do not rise as much as regular muffins so you will not need to fill the cups half full as you normally would.
- If using coconut sugar, sprinkle on top of muffins before placing them in the oven.
- Place in the middle rack of the oven and cook for 15 minutes. Remove from the oven and poke with a fork. If the fork is clean once removed than the muffins are done. If the fork has batter on it, continue to cook for 5 more minutes.
- Serve now or store in an airtight container on the counter for later. Top with butter, apple butter or almond butter.
Jay says
Could you do this with just almond flour?
foodbornewellness.com says
Hi Jay,
You probably could but, to be honest, I have not made this recipe in a very long time and I really need to update the post and re-test the recipe. When I started blogging, my recipe quality control wasn't as high as it is now (aka I didn't really know what I was doing) and I am currently working through all my older content. Looking at the recipe, I may try to remove the coconut flour when I update it just to reduce the number of ingredients, however, that usually involves tweaking the ratio of liquid ingredients. Let me know how it goes if you try it!
Finn says
Yum these have the perfect amount of sweetness. I made the mistake of using cupcake liners and they stuck probably because they are low oil so don't do that.
foodbornewellness.com says
Using a good amount of coconut oil when greasing the pan will do the trick usually!